CeSGO project
OverviewEn utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
SEEK ID: https://research-sharing.cesgo.org/projects/2
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
CesGO PALs: No PALs for this Project
Project created: 14th Oct 2016
Related items
Projects: CeSGO project, Training, Rapsodyn, Test_IFB, FAIR-factory, Training_private
Institutions: GenOuest, Institut Français de Bioinformatique
orcid.org/0000-0002-8959-8402
Projects: CeSGO project
Institutions: GenOuest
Projects: CeSGO project, EnginesOn project, FEED-A-GENE, Training, CORAIL MAD, Rapsodyn
Institutions: GenOuest, Biogenouest
Projects: Training, CeSGO project
Institutions: Default Institution
Integrating DMP data into Seek
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The CeSGO project itself. Software development and dissemination activities.
This project will help to gain a better undestanding of the pros and cons of collaborative and scientific data management tools on a bioinformatics facility.
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Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics
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lorem
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Dissemination on the CeSGO project and environment
Person responsible: Olivier Collin
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How people are using the CeSGO infrastructure and its different services.
Person responsible: Olivier Collin
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There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a
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Person responsible: Cyril Monjeaud
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90 trouts are transferred from freshwater to seawater during 21 days. Plamsatic ion concentrations and gill transcriptome expression are studied and related to better understand seawater acclimation functional processes on Rainbow trout.
Person responsible: Cyril Monjeaud
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Contributor: Olivier Collin
Assay type: Software development
Technology type: Information Technology
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Contributor: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
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Contributor: Cyril Monjeaud
Assay type: Reactomics
Technology type: Chemostat Measurement
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Kinetic Model of Lactococcus lactis PYK
LightningSimulate Model on JWS
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Abstract (Expand)
Authors: Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Lacroix Vincent,Rivals Éric,Lemaitre Claire,Miele Vincent,Sacomoto Gustavo,Marchet Camille,Cazaux Bastien,Zine El Aabidine Amal,Salmela Leena,Alves-Carvalho Susete,Andrieux Alexan,Uricaru Raluca,Peterlongo Pierre
Date Published: 1st Dec 2016
Journal: GigaSci
Abstract (Expand)
Author: Sacomoto G. A.,Kielbassa J.,Chikhi R.,Uricaru R.,Antoniou P.,Sagot M. F.,Peterlongo P.,Lacroix V.
Date Published: 2nd May 2012
Journal: BMC Bioinformatics
Abstract (Expand)
Author: McMurry Julie A.,Juty Nick,Blomberg Niklas,Burdett Tony,Conlin Tom,Conte Nathalie,Courtot Mélanie,Deck John,Dumontier Michel,Fellows Donal K.,Gonzalez-Beltran Alejandra,Gormanns Philipp,Grethe Jeffrey,Hastings Janna,Hériché Jean-Karim,Hermjakob Henning,Ison Jon C.,Jimenez Rafael C.,Jupp Simon,Kunze John,Laibe Camille,Le Novère Nicolas,Malone James,Martin Maria Jesus,McEntyre Johanna R.,Morris Chris,Muilu Juha,Müller Wolfgang,Rocca-Serra Philippe,Sansone Susanna-Assunta,Sariyar Murat,Snoep Jacky L.,Soiland-Reyes Stian,Stanford Natalie J.,Swainston Neil,Washington Nicole,Williams Alan R.,Wimalaratne Sarala M.,Winfree Lilly M.,Wolstencroft Katherine,Goble Carole,Mungall Christopher J.,Haendel Melissa A.,Parkinson Helen
Date Published: 29th Jun 2017
Journal: PLoS Biol
Abstract (Expand)
Authors: Yvan Le Bras, Dechamp Nicolas,Krieg Francine,Filangi Olivier,Guyomard René,Boussaha Mekki,Bovenhuis Henk,Pottinger Thomas G,Prunet Patrick,Roy Pascale Le,Quillet Edwige
Date Published: 22nd Jun 2011
Journal: BMC genetics
Presentation of the CeSGO concepts to the DMP-OPIDoR team
Creator: Olivier Collin
Contributor: Olivier Collin
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_8022
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_562
Taxonomy URI: Not specified
