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En utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
SEEK ID: https://research-sharing.cesgo.org/projects/2
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
CesGO PALs: No PALs for this Project
Project created: 14th Oct 2016
Related items
- People (4)
- Institutions (3)
- Investigations (4)
- Studies (5+1)
- Assays (3+1)
- Data files (7+2)
- Models (1)
- SOPs (1)
- Publications (4)
- Presentations (1+1)
- Organisms (3)
Projects: CeSGO project, Training, Rapsodyn, Test_IFB, FAIR-factory, Training_private
Institutions: GenOuest, Institut Français de Bioinformatique

Disciplines: Bioinformatician
Roles: Project Coordinator
Expertise: Data Management, Bioinformatics
Tools: Not specified
Projects: CeSGO project
Institutions: GenOuest
Disciplines: Not specified
Roles: Not specified
Expertise: Not specified
Tools: Not specified
Projects: CeSGO project, EnginesOn project, FEED-A-GENE, Training, CORAIL MAD, Rapsodyn
Institutions: GenOuest, Biogenouest
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Data Management, Software Engineering
Tools: docker, Python, galaxy, Web services, cloud, Workflows
Projects: Training, CeSGO project
Institutions: Default Institution
Disciplines: Not specified
Roles: Not specified
Expertise: Not specified
Tools: Not specified
The CeSGO project itself. Software development and dissemination activities.
This project will help to gain a better undestanding of the pros and cons of collaborative and scientific data management tools on a bioinformatics facility.
Snapshots: No snapshots
Studies: CeSGO communication, CeSGO usage
Assays: CeSGO resources usage
Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics
...
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
to test
Person responsible: Konogan Bourhy
Snapshots: No snapshots
Investigation: maDmp
Assays: No Assays
Dissemination on the CeSGO project and environment
Person responsible: Olivier Collin
Snapshots: No snapshots
Investigation: CeSGO
Assays: No Assays
How people are using the CeSGO infrastructure and its different services.
Person responsible: Olivier Collin
Snapshots: No snapshots
Investigation: CeSGO
Assays: CeSGO resources usage
There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a
...
Person responsible: Cyril Monjeaud
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Assays: Transcription profiling, clinical chemistry analysis
90 trouts are transferred from freshwater to seawater during 21 days. Plamsatic ion concentrations and gill transcriptome expression are studied and related to better understand seawater acclimation functional processes on Rainbow trout.
Person responsible: Cyril Monjeaud
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Assays: No Assays
Contributor: Olivier Collin
Assay type: Software development
Technology type: Information Technology
Snapshots: No snapshots
Investigation: CeSGO
Study: CeSGO usage
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Contributor: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Study: Detection Of QTL and eQTL with effects on osmor...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: E-coli extraction protocol
Data files: No Data files
Contributor: Cyril Monjeaud
Assay type: Reactomics
Technology type: Chemostat Measurement
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Study: Detection Of QTL and eQTL with effects on osmor...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: No SOPs
Data files: Data day 2, data transformed
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Chemical Measuments D2
Creators: Cyril Monjeaud, Yvan Le Bras
Contributor: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Kinetic Model of Lactococcus lactis PYK
LightningSimulate Model on JWS
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
SOP for labelled E-coli extraction protocol
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: Demonstration ISA, Detection Of QTL and functional genomics study ... and 1 hidden item
Studies: Detection Of QTL and eQTL with effects on osmor..., Example Study and 1 hidden item
Assays: Example Experimental Assay, Transcription profiling and 1 hidden item
Abstract (Expand)
Authors: Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Lacroix Vincent,Rivals Éric,Lemaitre Claire,Miele Vincent,Sacomoto Gustavo,Marchet Camille,Cazaux Bastien,Zine El Aabidine Amal,Salmela Leena,Alves-Carvalho Susete,Andrieux Alexan,Uricaru Raluca,Peterlongo Pierre
Date Published: 1st Dec 2016
Journal: GigaSci
DOI: 10.1186/s13742-015-0105-2
Citation: GigaSci 5(1)
Abstract (Expand)
Author: Sacomoto G. A.,Kielbassa J.,Chikhi R.,Uricaru R.,Antoniou P.,Sagot M. F.,Peterlongo P.,Lacroix V.
Date Published: 2nd May 2012
Journal: BMC Bioinformatics
PubMed ID: 22537044
Citation: BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S5. doi: 10.1186/1471-2105-13-S6-S5.
Abstract (Expand)
Author: McMurry Julie A.,Juty Nick,Blomberg Niklas,Burdett Tony,Conlin Tom,Conte Nathalie,Courtot Mélanie,Deck John,Dumontier Michel,Fellows Donal K.,Gonzalez-Beltran Alejandra,Gormanns Philipp,Grethe Jeffrey,Hastings Janna,Hériché Jean-Karim,Hermjakob Henning,Ison Jon C.,Jimenez Rafael C.,Jupp Simon,Kunze John,Laibe Camille,Le Novère Nicolas,Malone James,Martin Maria Jesus,McEntyre Johanna R.,Morris Chris,Muilu Juha,Müller Wolfgang,Rocca-Serra Philippe,Sansone Susanna-Assunta,Sariyar Murat,Snoep Jacky L.,Soiland-Reyes Stian,Stanford Natalie J.,Swainston Neil,Washington Nicole,Williams Alan R.,Wimalaratne Sarala M.,Winfree Lilly M.,Wolstencroft Katherine,Goble Carole,Mungall Christopher J.,Haendel Melissa A.,Parkinson Helen
Date Published: 29th Jun 2017
Journal: PLoS Biol
DOI: 10.1371/journal.pbio.2001414
Citation: PLoS Biol 15(6) : e2001414
Abstract (Expand)
Authors: Yvan Le Bras, Dechamp Nicolas,Krieg Francine,Filangi Olivier,Guyomard René,Boussaha Mekki,Bovenhuis Henk,Pottinger Thomas G,Prunet Patrick,Roy Pascale Le,Quillet Edwige
Date Published: 22nd Jun 2011
Journal: BMC genetics
Presentation of the CeSGO concepts to the DMP-OPIDoR team
Creator: Olivier Collin
Contributor: Olivier Collin
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_8022
Taxonomy URI: http://purl.obolibrary.org/obo/NCBITaxon_562
Taxonomy URI: Not specified