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SOP for labelled E-coli extraction protocol
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Created: 17th Oct 2016 at 07:40
Last updated: 17th Oct 2016 at 09:35
Last used: 8th Mar 2021 at 09:23

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Projects: CeSGO project, EnginesOn project, FEED-A-GENE, Training, CORAIL MAD, Rapsodyn
Institutions: GenOuest, Biogenouest
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Data Management, Software Engineering
Tools: docker, Python, galaxy, Web services, cloud, Workflows
En utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
Comme son nom l'indique, nous allons simplement créer une simple structure/ arbre ISA.
Snapshots: No snapshots
Studies: Example Study
Assays: Example Experimental Assay, Example Modelling Analysis
Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics
...
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
From https://fairdomhub.org/studies/244?graph_view=tree
A Study corresponds to an experiment whose design reflects a specific biological research question.
It is part of an Investigation into a particular process, phenomenon or thing.
A Study will have Assays that are "measurement experiments", a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a Study.
Person responsible: Paulette Lieby
Snapshots: No snapshots
Investigation: Demonstration ISA
Assays: Example Experimental Assay, Example Modelling Analysis
There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a
...
Person responsible: Cyril Monjeaud
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Assays: Transcription profiling, clinical chemistry analysis
from https://fairdomhub.org/assays/521?graph_view=tree
An Experimental Assay is a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a study.
Examples include RNA sequencing, proteomics, metabolomics, and many others.
There are many Experimental Assay Types to choose from, as well as many Technology Type. Moreover, one can create new types in both cases.
Finally, note that one may also associate this assay with one or more organisms, add samples,
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Contributor: Paulette Lieby
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Demonstration ISA
Study: Example Study
Organisms: No organisms
SOPs: E-coli extraction protocol
Data files: No Data files
Contributor: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Study: Detection Of QTL and eQTL with effects on osmor...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: E-coli extraction protocol
Data files: No Data files