L'objectif de ce projet est d'explorer le concept ISA. L'investigation "Demonstration ISA" est simplement cela : la création d'une structure minimale ISA.

D'autre part je (Paulette) me suis aussi amusée à explorer les fonctionalités SEEK/ISA en copiant une partie du contenu de https://demo.fairdomhub.org/investigations/2, voir https://research-sharing.cesgo.org/investigations/58.

From https://fairdomhub.org/projects/75 : The SEEK is a web interface to a database of research "assets" organised in a hierarchical "ISA structure" (investigation-study-assay) [1]. These are further organised into projects and programmes.

  • Programme = Overarching research theme (The Digital Salmon)
  • Project = Research grant (DigiSal, GenoSysFat)
  • Investigation = a particular biological process, phenomenon or thing (typically corresponds to [plans for] one or more closely related papers)
  • Study = experiment whose design reflects a specific biological research question
  • Assay = standardized measurement or diagnostic experiment using a specific protocol (applied to material from a study)

The main Asset types are

  • Data file
  • Model file
  • Standard operating procedure (SOP)

A key benefit of the SEEK is that it provides context for research assets. Each asset's webpage has an interactive graph linking to related assets. Thus, simply sharing a link to an experiment (a Study) makes clear its purpose and broader motivation, shows the resulting data, and links to SOPs for method details.

SEEK ID: https://research-sharing.cesgo.org/projects/18

Public web page: https://www.france-bioinformatique.fr

Organisms: No Organisms specified

CesGO PALs: No PALs for this Project

Project created: 16th Jul 2020

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