Assays

What is an Assay?

33 Assays visible to you, out of a total of 80

RNA-seq of lymph node lysates

FAIR-factory

No description specified

Submitter: Matthieu Le Gallo

Assay type: Gene Expression Profiling

Technology type: Rna-seq

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: 1 hidden item

Snapshots: No snapshots

Created: 5th Feb 2021 at 09:09

RNA-seq bla bla bla

FAIR-factory

No description specified

Submitter: Marc Aubry

Assay type: RNA-seq Profiling

Technology type: Rna-seq

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: Homo sapiens

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Sep 2020 at 12:17

Example Experimental Assay

Test_IFB

from https://fairdomhub.org/assays/521?graph_view=tree

An Experimental Assay is a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a study. Examples include RNA sequencing, proteomics, metabolomics, and many others.

There are many Experimental Assay Types to choose from, as well as many Technology Type. Moreover, one can create new types in both cases.

Finally, note that one may also associate this assay with one or more organisms, add samples, ...

Submitter: Paulette Lieby

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Demonstration ISA

Study: Example Study

Organisms: No organisms

SOPs: E-coli extraction protocol

Data files: No Data files

Snapshots: No snapshots

Created: 18th Sep 2020 at 12:35, Last updated: 18th Sep 2020 at 13:10

Example Modelling Analysis

Test_IFB

An excellent example can be found https://demo.fairdomhub.org/assays/7?graph_view=tree which shows how a Model can be added to this analysis, together with a model that can be simulated on the fly on https://fair-dom.org/jws-online/.

I actually copy this here and one can run the model from there.

Submitter: Paulette Lieby

Biological problem addressed: Model Analysis Type

Investigation: Demonstration ISA

Study: Example Study

Organisms: No organisms

Models: Teusink

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Sep 2020 at 12:57, Last updated: 18th Sep 2020 at 13:01

Time course analysis of transcription

Test_IFB

https://demo.seek4science.org/investigations/2from

Submitter: Paulette Lieby

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Growth control of the eukaryote cell: a systems...

Study: A time course analysis of transcription respons...

Organisms: No organisms

SOPs: No SOPs

Data files: assay metabolome

Snapshots: No snapshots

Created: 20th Jul 2020 at 13:49

CeSGO resources usage

CeSGO project

No description specified

Submitter: Olivier Collin

Assay type: Software development

Technology type: Information Technology

Investigation: CeSGO

Study: CeSGO usage

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 11th Oct 2019 at 10:02

HiClamp

DEMETER

Criblage d'ovocytes exprimant les récepteurs olfactifs de Spodoptera littoralis

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Préparation et conservation des ovocytes

Organisms: No organisms

SOPs: 1 hidden item

Data files: No Data files

Snapshots: No snapshots

Created: 29th May 2018 at 14:04

Microinjection d'ovocytes

DEMETER

Microinjection des ovocytes avec de l'ADN SlitOR, coinjecté avec l'ADN SlitORco et un marqueur ADN GFP

Submitter: Guillaume Audic

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Etude d'expression ovocytaire

Study: Préparation et conservation des ovocytes

Organisms: No organisms

SOPs: Microinjection ovocytes X.laevis

Data files: No Data files

Snapshots: No snapshots

Created: 29th May 2018 at 13:08, Last updated: 29th May 2018 at 13:08

Défollicularisation

DEMETER

Digestion enzymatique des fragments pour obtenir des ovocytes défolliculés prêts à être injectés

Submitter: Guillaume Audic

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Etude d'expression ovocytaire

Study: Préparation et conservation des ovocytes

Organisms: No organisms

SOPs: 1 hidden item

Data files: No Data files

Snapshots: No snapshots

Created: 29th May 2018 at 13:06

Prélèvement 1

DEMETER

Prélèvement sur femelles (num lot :RRTL251011 TF5) Date : 28/05/2018

Submitter: Guillaume Audic

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Etude d'expression ovocytaire

Study: Préparation et conservation des ovocytes

Organisms: No organisms

SOPs: Récupération de fragments d'ovaires

Data files: No Data files

Snapshots: No snapshots

Created: 29th May 2018 at 13:03

SlitORco

DEMETER

Données de criblage obtenues pour l'ORco

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Criblage SlitOR vs ligands

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th May 2018 at 07:25

SlitOR35

DEMETER

Données de criblage obtenues pour l'OR35

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Criblage SlitOR vs ligands

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th May 2018 at 07:24

SlitOR31

DEMETER

Données de criblage obtenues pour l'OR31

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Criblage SlitOR vs ligands

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th May 2018 at 07:24

SlitOR28

DEMETER

Données de criblage obtenues pour l'OR28

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Criblage SlitOR vs ligands

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th May 2018 at 07:24

SlitOR27

DEMETER

Données de criblage obtenues pour l'OR27

Submitter: Guillaume Audic

Assay type: Electrophysiology

Technology type: Two Electrode Voltage Clamp

Investigation: Etude d'expression ovocytaire

Study: Criblage SlitOR vs ligands

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th May 2018 at 07:23

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