Demonstration ISA

L'objectif de ce projet est d'explorer le concept ISA. L'investigation "Demonstration ISA" est simplement cela : la création d'une structure minimale ISA.

D'autre part je (Paulette) me suis aussi amusée à explorer les fonctionalités SEEK/ISA en copiant une partie du contenu de https://demo.fairdomhub.org/investigations/2, voir https://research-sharing.cesgo.org/investigations/58.

From https://fairdomhub.org/projects/75 : The SEEK is a web interface to a database of research "assets" organised in ...

From https://fairdomhub.org/studies/244?graph_view=tree

A Study corresponds to an experiment whose design reflects a specific biological research question. It is part of an Investigation into a particular process, phenomenon or thing. A Study will have Assays that are "measurement experiments", a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a Study.

from https://fairdomhub.org/assays/521?graph_view=tree

An Experimental Assay is a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a study. Examples include RNA sequencing, proteomics, metabolomics, and many others.

There are many Experimental Assay Types to choose from, as well as many Technology Type. Moreover, one can create new types in both cases.

Finally, note that one may also associate this assay with one or more organisms, add samples, ...

An excellent example can be found https://demo.fairdomhub.org/assays/7?graph_view=tree which shows how a Model can be added to this analysis, together with a model that can be simulated on the fly on https://fair-dom.org/jws-online/.

I actually copy this here and one can run the model from there.

from https://demo.seek4science.org/investigations/2

SOP for labelled E-coli extraction protocol