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- Cyril Monjeaud
SEEK ID: https://research-sharing.cesgo.org/people/2
Location:
France
Disciplines: Bioinformatician
Expertise: Software Engineering, Data Management
Tools: galaxy, Web services, cloud, Workflows, docker, Python
ORCID: Not specified
CeSGO project (GenOuest) ; EnginesOn project (GenOuest) ; CeSGO project (Biogenouest) ; FEED-A-GENE (GenOuest) ; Training (GenOuest) ; CORAIL MAD (GenOuest) ; Rapsodyn (GenOuest)
Related items
- Projects (6)
- Institutions (2)
- Investigations (2)
- Studies (2)
- Assays (2)
- Data files (7+1)
- Models (1)
- SOPs (1)
- Publications (5)
En utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
Project dedicated for training. The content is private so no limit for your tests.
Public web page: Not specified
Organisms: Saccharomyces cerevisiae
Optimisation of the RAPeSeed Oil content anD Yield under low Nitrogen input: improving breeding of adapted varieties using genetics and genomics.
Public web page: http://www.rapsodyn.fr/
Organisms: Brassica rapa, Brassica napus, Brassica oleracea
Feed-a-Gene aims to better adapt different components of monogastric livestock production systems (i.e., pigs, poultry and rabbits) to improve the overall efficiency and to reduce the environmental impact.
Public web page: http://www.feed-a-gene.eu/
Organisms: Sus scrofa, Oryctolagus cuniculus, Gallus gallus, Perdicinae
ma description du projet modifiée
Public web page: Not specified
Organisms: Xenopus laevis
Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics
...
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a
...
Person responsible: Cyril Monjeaud
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Assays: Transcription profiling, clinical chemistry analysis
90 trouts are transferred from freshwater to seawater during 21 days. Plamsatic ion concentrations and gill transcriptome expression are studied and related to better understand seawater acclimation functional processes on Rainbow trout.
Person responsible: Cyril Monjeaud
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Assays: No Assays
Contributor: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Study: Detection Of QTL and eQTL with effects on osmor...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: E-coli extraction protocol
Data files: No Data files
Contributor: Cyril Monjeaud
Assay type: Reactomics
Technology type: Chemostat Measurement
Snapshots: No snapshots
Investigation: Detection Of QTL and functional genomics study ...
Study: Detection Of QTL and eQTL with effects on osmor...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: No SOPs
Data files: Data day 2, data transformed
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Chemical Measuments D2
Creators: Cyril Monjeaud, Yvan Le Bras
Contributor: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Kinetic Model of Lactococcus lactis PYK
LightningSimulate Model on JWS
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
SOP for labelled E-coli extraction protocol
Creator: Cyril Monjeaud
Contributor: Cyril Monjeaud
Investigations: Demonstration ISA, Detection Of QTL and functional genomics study ... and 1 hidden item
Studies: Detection Of QTL and eQTL with effects on osmor..., Example Study and 1 hidden item
Assays: Example Experimental Assay, Transcription profiling and 1 hidden item

Abstract (Expand)
Author: Johnson D. A.,Hirsch J. A.,Moore K. A.,Redline S.,Diez Roux A. V.
Date Published: No date defined
Journal: Am J Epidemiol
PubMed ID: 29547912
Citation: Am J Epidemiol. 2018 Mar 14. pii: 4935066. doi: 10.1093/aje/kwx302.
Abstract (Expand)
Authors: Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Lacroix Vincent,Rivals Éric,Lemaitre Claire,Miele Vincent,Sacomoto Gustavo,Marchet Camille,Cazaux Bastien,Zine El Aabidine Amal,Salmela Leena,Alves-Carvalho Susete,Andrieux Alexan,Uricaru Raluca,Peterlongo Pierre
Date Published: 1st Dec 2016
Journal: GigaSci
DOI: 10.1186/s13742-015-0105-2
Citation: GigaSci 5(1)
Abstract (Expand)
Author: Sacomoto G. A.,Kielbassa J.,Chikhi R.,Uricaru R.,Antoniou P.,Sagot M. F.,Peterlongo P.,Lacroix V.
Date Published: 2nd May 2012
Journal: BMC Bioinformatics
PubMed ID: 22537044
Citation: BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S5. doi: 10.1186/1471-2105-13-S6-S5.
Abstract (Expand)
Author: McMurry Julie A.,Juty Nick,Blomberg Niklas,Burdett Tony,Conlin Tom,Conte Nathalie,Courtot Mélanie,Deck John,Dumontier Michel,Fellows Donal K.,Gonzalez-Beltran Alejandra,Gormanns Philipp,Grethe Jeffrey,Hastings Janna,Hériché Jean-Karim,Hermjakob Henning,Ison Jon C.,Jimenez Rafael C.,Jupp Simon,Kunze John,Laibe Camille,Le Novère Nicolas,Malone James,Martin Maria Jesus,McEntyre Johanna R.,Morris Chris,Muilu Juha,Müller Wolfgang,Rocca-Serra Philippe,Sansone Susanna-Assunta,Sariyar Murat,Snoep Jacky L.,Soiland-Reyes Stian,Stanford Natalie J.,Swainston Neil,Washington Nicole,Williams Alan R.,Wimalaratne Sarala M.,Winfree Lilly M.,Wolstencroft Katherine,Goble Carole,Mungall Christopher J.,Haendel Melissa A.,Parkinson Helen
Date Published: 29th Jun 2017
Journal: PLoS Biol
DOI: 10.1371/journal.pbio.2001414
Citation: PLoS Biol 15(6) : e2001414
Abstract (Expand)
Authors: Yvan Le Bras, Dechamp Nicolas,Krieg Francine,Filangi Olivier,Guyomard René,Boussaha Mekki,Bovenhuis Henk,Pottinger Thomas G,Prunet Patrick,Roy Pascale Le,Quillet Edwige
Date Published: 22nd Jun 2011
Journal: BMC genetics