SEEK ID: https://research-sharing.cesgo.org/people/2
Location: France
ORCID: Not specified
Joined: 14th Oct 2016
Expertise: Data Management, Software Engineering
Tools: docker, galaxy, cloud, Python, Web services, Workflows
CeSGO project (GenOuest) ; EnginesOn project (GenOuest) ; CeSGO project (Biogenouest) ; FEED-A-GENE (GenOuest) ; Training (GenOuest) ; CORAIL MAD (GenOuest) ; Rapsodyn (GenOuest)
Related items
- Projects (6)
- Institutions (2)
- Investigations (2)
- Studies (2)
- Assays (2)
- Data files (7+1)
- Models (1)
- SOPs (1)
- Publications (5)
En utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
Project dedicated for training. The content is private so no limit for your tests.
Public web page: Not specified
Organisms: Saccharomyces cerevisiae
Optimisation of the RAPeSeed Oil content anD Yield under low Nitrogen input: improving breeding of adapted varieties using genetics and genomics.
Public web page: http://www.rapsodyn.fr/
Organisms: Brassica rapa, Brassica napus, Brassica oleracea
Feed-a-Gene aims to better adapt different components of monogastric livestock production systems (i.e., pigs, poultry and rabbits) to improve the overall efficiency and to reduce the environmental impact.
Public web page: http://www.feed-a-gene.eu/
Organisms: Sus scrofa, Oryctolagus cuniculus, Gallus gallus, Perdicinae
ma description du projet modifiée
Public web page: Not specified
Organisms: Xenopus laevis
Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics ...
Submitter: Cyril Monjeaud
Studies: Detection Of QTL and eQTL with effects on osmoregulation capacities in t..., Time-course study of rainbow trout Oncorhynchus mykiss functional respon...
Assays: Transcription profiling, clinical chemistry analysis
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a ...
Submitter: Cyril Monjeaud
Investigation: Detection Of QTL and functional genomics study ...
Assays: Transcription profiling, clinical chemistry analysis
Snapshots: No snapshots
90 trouts are transferred from freshwater to seawater during 21 days. Plamsatic ion concentrations and gill transcriptome expression are studied and related to better understand seawater acclimation functional processes on Rainbow trout.
Submitter: Cyril Monjeaud
Investigation: Detection Of QTL and functional genomics study ...
Assays: No Assays
Snapshots: No snapshots
Submitter: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Detection Of QTL and functional genomics study ...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: E-coli extraction protocol
Data files: No Data files
Snapshots: No snapshots
Submitter: Cyril Monjeaud
Assay type: Reactomics
Technology type: Chemostat Measurement
Investigation: Detection Of QTL and functional genomics study ...
Organisms: Oncorhynchus mykiss (chemostat)
SOPs: No SOPs
Data files: Data day 2, data transformed
Snapshots: No snapshots
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Chemical Measuments D2
Creators: Cyril Monjeaud, Yvan Le Bras
Submitter: Cyril Monjeaud
Investigations: Detection Of QTL and functional genomics study ...
Studies: Detection Of QTL and eQTL with effects on osmor...
Assays: clinical chemistry analysis
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Kinetic Model of Lactococcus lactis PYK LightningSimulate Model on JWS
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
SOP for labelled E-coli extraction protocol
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Investigations: Demonstration ISA, Detection Of QTL and functional genomics study ... and 1 hidden item
Studies: Detection Of QTL and eQTL with effects on osmor..., Example Study and 1 hidden item
Assays: Example Experimental Assay, Transcription profiling and 1 hidden item
Abstract (Expand)
Authors: Julie A. McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K. Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Jean-Karim Hériché, Henning Hermjakob, Jon C. Ison, Rafael C. Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R. McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L. Snoep, Stian Soiland-Reyes, Natalie J. Stanford, Neil Swainston, Nicole Washington, Alan R. Williams, Sarala M. Wimalaratne, Lilly M. Winfree, Katherine Wolstencroft, Carole Goble, Christopher J. Mungall, Melissa A. Haendel, Helen Parkinson
Date Published: 29th Jun 2017
Publication Type: Not specified
DOI: 10.1371/journal.pbio.2001414
Citation: PLoS Biol 15(6) : e2001414
Abstract (Expand)
Authors: Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo
Date Published: 1st Dec 2016
Publication Type: Not specified
DOI: 10.1186/s13742-015-0105-2
Citation: GigaSci 5(1)
Abstract (Expand)
Authors: G. A. Sacomoto, J. Kielbassa, R. Chikhi, R. Uricaru, P. Antoniou, M. F. Sagot, P. Peterlongo, V. Lacroix
Date Published: 2nd May 2012
Publication Type: Not specified
PubMed ID: 22537044
Citation: BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S5. doi: 10.1186/1471-2105-13-S6-S5.
Abstract (Expand)
Authors: Yvan Le Bras, Nicolas Dechamp, Francine Krieg, Olivier Filangi, René Guyomard, Mekki Boussaha, Henk Bovenhuis, Thomas G Pottinger, Patrick Prunet, Pascale Le Roy, Edwige Quillet
Date Published: 22nd Jun 2011
Publication Type: Not specified
Abstract (Expand)
Authors: D. A. Johnson, J. A. Hirsch, K. A. Moore, S. Redline, A. V. Diez Roux
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29547912
Citation: Am J Epidemiol. 2018 Mar 14. pii: 4935066. doi: 10.1093/aje/kwx302.